single-cell-analysis topic

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

immunomind

Analysis Pipeline for Single Cell ATAC-seq

r3fang

Community-provided extensions to Seurat

satijalab

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

sqjin

Systematically learn and evaluate manifolds from high-dimensional data

davisidarta

Scissor package

sunduanchen

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

yanwu2014

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

JEFworks-Lab

Cluster single cells and analyze cell clade relationships with colorful visualizations.

GregorySchwartz

A collection of 50+ trajectory inference methods within a common interface 📥📤

dynverse