microbiome topic

Versatile open-source tool for microbiome analysis

torognes

Accurate sample inference from amplicon data with single nucleotide resolution

benjjneb

A robust and fast clustering method for amplicon-based studies

torognes

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

WrightonLabCSU

R package for microbiome biomarker discovery

yiluheihei

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

benjjneb

microbiome R package

microbiome

Qiita - A multi-omics databasing effort

qiita-spots

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

biocore

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

grimmlab