neherlab

Results 9 repositories owned by neherlab

covid19_scenarios

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Models of COVID-19 outbreak trajectories and hospital demand

treetime

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Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

covid19_scenarios_data

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Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

CoV_Seasonality

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Model coronavirus seasonality and explore consequences for nCoV dynamics

pan-genome-analysis

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Processing pipeline for pan-genome visulization and exploration

pan-genome-visualization

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Visualization of the pan-genome output by panX

pangraph

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A bioinformatic toolkit to align genome assemblies into pangenome graphs

SARS-CoV-2_variant-reports

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Informal summaries of notable SARS-CoV-2 lineages

treetime_examples

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A collection of documented examples using TreeTime