hic topic

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

deeptools

SALSA: A tool to scaffold long read assemblies with Hi-C data

marbl

A GAN-based method for Enhancing Hi-C data

omegahh

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

kundajelab

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.

sanger-tol

Extract Sequence from Genome According to Annotation File

junjunlab

R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes

HenrikBengtsson

ren-lab

High-performance stochastic modeling of DNA loop extrusion interactions

paulsengroup

Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices

dozmorovlab