Kundaje Lab
Results
22
repositories owned by
Kundaje Lab
deeplift
802
Stars
162
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Public facing deeplift repo
atac_dnase_pipelines
160
Stars
81
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ATAC-seq and DNase-seq processing pipeline
chipseq_pipeline
105
Stars
40
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AQUAS TF and histone ChIP-seq pipeline
bpnet
132
Stars
31
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Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
dragonn
253
Stars
71
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A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
3DChromatin_ReplicateQC
39
Stars
16
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Software to compute reproducibility and quality scores for Hi-C data
abstention
36
Stars
4
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Algorithms for abstention, calibration and domain adaptation to label shift.
alzheimers_parkinsons
39
Stars
14
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Watchers
Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
ChromDragoNN
44
Stars
11
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Watchers
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"