3d-genome topic
List
3d-genome repositories
cLoops
108
Stars
18
Forks
Watchers
Accurate and flexible loops calling tool for 3D genomic data.
cooler
191
Stars
53
Forks
Watchers
A cool place to store your Hi-C
HiC_tools
504
Stars
117
Forks
Watchers
A collection of tools for Hi-C data analysis
juicer
393
Stars
181
Forks
Watchers
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Higashi
72
Stars
9
Forks
Watchers
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
MATCHA
28
Stars
5
Forks
Watchers
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
SNIPER
29
Stars
11
Forks
Watchers
nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder
HiCLift
59
Stars
4
Forks
Watchers
A fast and efficient tool for converting chromatin interaction data between genome assemblies
genomedisco
25
Stars
10
Forks
Watchers
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
cLoops2
38
Stars
6
Forks
Watchers
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.