variant-calls topic

List variant-calls repositories

benchmarking-tools

182
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46
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Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

csv2vcf

70
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23
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🔧 Simple script in python to convert CSV files to VCF

starfish

22
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2
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Intersect multiple VCF files with haplotype awareness

SeqArray

42
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10
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Data management of large-scale whole-genome sequence variant calls (Development version only)

umccrise

19
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8
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:snake: DRAGEN Tumor/Normal workflow post-processing

TeamTeri

52
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16
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Bioinformatics on GCP, AWS or Azure

grenepipe

79
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18
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A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.