bam-files topic

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

telatin

microsatellite instability detection using tumor only or paired tumor-normal data

ding-lab

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...

nsalomonis

:card_index: Retrieve data in genomic intervals with a Python interface for tabix.

slowkow

Sequence alignment tools

BioJulia

Learning the Sequence Alignment/Map format

davetang

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

chgibb

Go / Golang Bioinformatics Library

pbenner

:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.

slowkow

Parse and process SAM and BAM formatted files

BioJulia