epigenetics topic

Analysis Pipeline for Single Cell ATAC-seq

r3fang

Single-cell Transcriptome and Regulome Analysis Pipeline

liulab-dfci

Signal-level algorithms for MinION data

jts

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...

nanoporetech

Deep learning infrastructure for genomics

BIMSBbioinfo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

nanoporetech

Deep neural networks for predicting CpG methylation

cangermueller

Detecting methylation using signal-level features from Nanopore sequencing reads

bioinfomaticsCSU

mgatk: mitochondrial genome analysis toolkit

caleblareau

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

yupenghe