bulk-rna-seq topic

integrated RNA-seq Analysis Pipeline

nunofonseca

a fully Bayesian approach to deconvolve tumor microenvironment

Danko-Lab

:hibiscus: reference-free transcriptome assembly for short and long reads

bcgsc

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

digitalcytometry

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

earmingol

A python library for multi omics included bulk and single cell RNA-seq analysis.

Starlitnightly

Workflow management with Nextflow and nf-core

carpentries-incubator

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

carpentries-incubator

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

hms-dbmi