bulk-rna-seq topic
irap
integrated RNA-seq Analysis Pipeline
TED
a fully Bayesian approach to deconvolve tumor microenvironment
RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
omicverse
A python library for multi omics included bulk and single cell RNA-seq analysis.
workflows-nextflow
Workflow management with Nextflow and nf-core
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
dseqr
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.