cell-cell-communication topic

NicheNet: predict active ligand-target links between interacting cells

saeyslab

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

sqjin

LIANA: a LIgand-receptor ANalysis frAmework

saezlab

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

earmingol

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

JEFworks-Lab

R package to do the Ligand Receptor Analysis Visualization

CostaLab

Learning cell communication from spatial graphs of cells

theislab

A manually curated database of literature-supported ligand-receptor interactions in human and mouse

ZJUFanLab

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

ZJUFanLab

LIANA+: an all-in-one framework for cell-cell communication

saezlab