multiomics topic

Reference mapping for single-cell genomics

theislab

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

parashardhapola

Read specialized NGS formats as data frames in R, Python, and more.

abdenlab

𝒫robabilistic modeling of RNA velocity ⬱

pinellolab

The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

bigbio

SIMBA: SIngle-cell eMBedding Along with features

huidongchen

scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference

CostaLab

A repository to convert SDRF proteomics files into pipelines config files

bigbio

GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)

futianfan