multiomics topic

Reference mapping for single-cell genomics

theislab

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

parashardhapola

Read specialized NGS formats as data frames in R, Python, and more.

abdenlab

𝒫robabilistic modeling of RNA velocity ⬱

pinellolab

The Proteomics Experimental Design file format: Standard for experimental design annotation

bigbio

SIMBA: SIngle-cell eMBedding Along with features

huidongchen

scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference

CostaLab