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ExportModel error
Hi.
I need to use the input exportModel(model, filename...), but result in an error:
WARNING: There is no unconstrained field in the model structure. This means that no metabolites are considered exchange metabolites WARNING: The "inchis" field must be a cell array of strings WARNING: The "rxnReferences" field must be a cell array of strings WARNING: The model contains empty reaction IDs WARNING: The following reaction IDs are duplicates:
Array indices must be positive integers or logical values.
Error in checkModelStruct (line 228) metInComp=strcat(model.metNames,'[',model.comps(model.metComps),']');
Error in exportModel (line 68) checkModelStruct(model,false);
Error in exportModelxml (line 13) exportModel(modelRAVEN2,'reh16_V10.xml',1,0);
I hereby confirm that I have:
- [x ] Tried to solve the issue on my own
- [ x] Retried to run my code with the latest version of The COBRA Toolbox
- [ x] Checked that a similar issue has not already been opened
the input complete is: clear solverOK = changeCobraSolver('glpk','LP'); modelCOBRA=readCbModel('reh16_gapfilled_cobra_V10.xls'); modelRAVEN2=ravenCobraWrapper(modelCOBRA); modelRAVEN2.id = char("raeu"); modelRAVEN2.description = char("ralstonia eutropha"); modelRAVEN2.annotation = struct(); modelRAVEN2.rxnMiriams = cell(2911,1); modelRAVEN2.rxnReferences = cell(2911,1); %modelRAVEN2.rxnConfidenceScores = double(2911); modelRAVEN2.geneShortNames= cell(1584,1); modelRAVEN2.inchis= cell(1860,1); exportModel(modelRAVEN2,'reh16_V10.xml',1,0);
Thanks!