nf-core

Results 61 repositories owned by nf-core

kmermaid

19
Stars
11
Forks
Watchers

k-mer similarity analysis pipeline

lncpipe

30
Stars
16
Forks
Watchers

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

mhcquant

30
Stars
25
Forks
Watchers

Identify and quantify MHC eluted peptides from mass spectrometry raw data

website

62
Stars
178
Forks
Watchers

Code and files for the main nf-core website.

pangenome

52
Stars
14
Forks
Watchers

Renders a collection of sequences into a pangenome graph.

proteomicslfq

32
Stars
18
Forks
Watchers

Proteomics label-free quantification (LFQ) analysis pipeline

raredisease

84
Stars
34
Forks
Watchers

Call and score variants from WGS/WES of rare disease patients.

smrnaseq

71
Stars
122
Forks
Watchers

A small-RNA sequencing analysis pipeline

taxprofiler

95
Stars
32
Forks
Watchers

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

differentialabundance

46
Stars
29
Forks
Watchers

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq