nf-core
nf-core
kmermaid
k-mer similarity analysis pipeline
lncpipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
website
Code and files for the main nf-core website.
pangenome
Renders a collection of sequences into a pangenome graph.
proteomicslfq
Proteomics label-free quantification (LFQ) analysis pipeline
raredisease
Call and score variants from WGS/WES of rare disease patients.
smrnaseq
A small-RNA sequencing analysis pipeline
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq