kmer topic

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

jerryji1993

De novo genome assembly and multisample variant calling

mcveanlab

Inference of ploidy and heterozygosity structure using whole genome sequencing data

KamilSJaron

Quickly search, compare, and analyze genomic and metagenomic data sets.

sourmash-bio

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

shenwei356

Count kmers with a more efficient (faster) hash table

alexpreynolds

Phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.

zhangrengang

Predict plasmids from uncorrected long read data

andrewjpage

modular k-mer count matrix and Bloom filter construction for large read collections

tlemane

a versatile toolkit for k-mers with taxonomic information

shenwei356