k-mer topic

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

dib-lab

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...

pirovc

A compressed, associative, exact, and weighted dictionary for k-mers.

jermp

Yet another k-mer analyzer

lh3

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

refresh-bio

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

bacpop

SEER, reimplemented in python 🐍🔮

mgalardini

Learn interpretable computational phenotyping models from k-merized genomic data

aldro61

a versatile toolkit for k-mers with taxonomic information

shenwei356

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

seqan