mass-spectrometry topic
pymsfilereader
Thermo MSFileReader Python bindings
batmass
Mass spectrometry data visualization
xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
OpenMS
The codebase of the OpenMS project
pymzML
pymzML - an interface between Python and mzML Mass spectrometry Files
alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.