M Bernt
Can someone tell me which assumption convert_gff3_to_ncbi_tbl makes on the formatting of the names? Apparently ours miss something: ``` python3 gff/convert_gff3_to_ncbi_tbl.py -i ../juncus.fasta.transdecoder.refined.sort.gff3 -o ../juncus.fasta.transdecoder.refined.sort.tbl -ln LAB -nap NAP -gf...
The conda package on the conda-forge channel seems still to suffer from https://github.com/etetoolkit/ete/issues/195 .. so I was wondering if its possible to syncronize the recipes .. Background, for Galaxy tools...
On my system 10 thousands of job template files accumulated (was not aware) in `cluster_files_directory`. Then the files are cleaned up automatically. - [ ] get rid of `cluster_files_directory` in...
Follow up on https://github.com/galaxyproject/galaxy/pull/9425 ... Problem seems to be that delta_frac is encoded to json at some point where `Inf` is encoded by `'__Infinity__'` but decoding is not doing the...
- when uploading a file the data set name should not contain a path component. this happens for instance if planemo is used and the input data is in subfolders...
**major improvement**: when using upload_from_galaxy_filesystem the PATH needed to be given absolute and the script generates the complete hierarchy in Galaxy library (i.e. starting from root). Now the script has...
I guess it should be in config/ instead of the Galaxy root
asserts: n, delta, min, max need to be str since the allow extensions: (K|M|G|T|P|E)i solved by automatically converting bools, integers, and suffixed integers before calling the assertion functions. follow up...
if outputs have filters or are discovered ## How to test the changes? (Select all options that apply) - [x] I've included appropriate [automated tests](https://docs.galaxyproject.org/en/latest/dev/writing_tests.html). - [ ] This is...
In a recent gitter discussion (https://gitter.im/galaxy-iuc/iuc?at=6190aeff8c019f0d0b93414b) it was asked for a way to have a select list containing only elements that are not yet in a data table.. Et voila...