M Bernt

New release: fix discrepancy between pypi, release, and git

2

I'm currently trying to fix the bioconda recipe for plasflow: https://github.com/bioconda/bioconda-recipes/pull/27766 I noticed that the content of the download available at pypi and the release on github seems to differ....

galaxy delete group

2

It would be nice to have a delete_group function for galaxy. In there a reason that this is not implemented -- or is there maybe another way to achieve group...

update_group behaviour not as expected

6

The documented behavior of update_group is to substitute previous users. But actually it leads to duplicates of user group associations in the galaxy DB. This has been tested with version...

bump requirements to 22.01

4

and see what breaks

Document the use of mandatory macro parameters and add named macro tokens

2

learned while working on https://github.com/galaxyproject/galaxy/pull/13152

See https://github.com/galaxyproject/tools-iuc/pull/4456#issuecomment-1168860716 Currently all are warnings https://github.com/galaxyproject/planemo/blob/2c7fc391868a6d51d78d74445f7b6cb1262d97e7/planemo/shed_lint.py#L303 Maybe move to galaxy tool-util?

Adapted `--channels` such that it also affects Galaxy's mulled channels config. Update docs due to the recent change in bioconda CI (packages and images are now available only as download)...

test: check if extra files were created in Galaxy's file_path

6

This is an attempt to automatize https://github.com/galaxyproject/tools-iuc/pull/3986#issuecomment-926729276 fixes https://github.com/galaxyproject/planemo/issues/1189 Seems difficult / impossible to find out which tool / test generates the extra files, so I just set all tests...

https://github.com/galaxyproject/galaxy/pull/4437

ci_find*: include sub and parent dirs

2

fixes https://github.com/galaxyproject/planemo/issues/1129 and more: include also tools/repos with: - change of test data - change of supplementary scripts (this already was the case for ci_find_repos) - change of macros where...