M Bernt
As a follow up from discussions in https://github.com/galaxyproject/galaxy/pull/7372 I would like to suggest and discuss the following convenience function for tool developers. Currently tool developers often use something like `$safe_id...
- depends on https://github.com/bioconda/bioconda-recipes/pull/36871 which hopefully solves https://github.com/nextgenusfs/funannotate/issues/520 ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a...
Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). * If this PR adds or updates a recipe, use "Add"...
FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits unrestricted use (educational + commercial)...
This PR adds: 1. Reusable Workflows which can be used in all IUC style repos - The hope/aim is that users of these workflows will need to update/sync their workflows...
the qiime2 display application (view.qiime2.org) does not work for non-public Galaxy instances. This is a workaround. qiime2 viz artifacts are just zip files which also contain the html + data...
Integrate the planemo autoupdate workflow as reusable workflow - Its to the largest extend identical to the excellent work of @simonbray at https://github.com/planemo-autoupdate/autoupdate, I only simplified a few bits. -...
There are many tools that have select parameters with duplicated values or names, which probably needs to be fixes. It would be interesting to see if there are valid cases...
use galaxy-data package - [ ] needs to remove the tool from GALAXY_LIB_TOOLS_UNVERSIONED in the galaxy repo: https://github.com/galaxyproject/galaxy/pull/14573 FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and...
FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits unrestricted use (educational + commercial)...