M Bernt

Results 222 issues of M Bernt

I like to run `planemo test A.xml B.xml ...` because sometimes the tool directory is not clean, i.e. there is a lot of other things besides tools, test-data, etc. Used...

I have a tool with a test like: ``` ... ``` irrespective of the content of the the bam files the test is successful. Same if compare="diff". The `` are...

In order to make the IUC version of the tool work (https://github.com/galaxyproject/tools-iuc/pull/4769) we need to - remove it from the list of unversioned tools (b7ad595b7298729924a0744fba62ba7a6198410a) - or just deprecate it...

area/testing
area/tools
area/tool-framework

1. do not wait 2x in tool tests 2. do not use accumulated sleep times but time difference Not sure if the 2nd is good or possible. If not we...

area/tool-framework

Often tool tests need a long time time. In `planemo` we can now set a general timeout which is is employed by IUC style CI (using 900s). Problem is that...

Add test for optional select with default testing if it can be unselected in a test was just wondering if this works and was happy to see that is does....

area/documentation
area/testing

Add a test case and fix the job wrapper. Since recently planemo was changed to use `outputs_to_working_directory` this branch of the code was used which used the wrong fail method....

help wanted
area/testing
area/testing/integration

Linting of valid childs for params has been added here: https://github.com/galaxyproject/galaxy/pull/12232, but options for data params has been forgotten. In addition also checks for valid attribs and filter types has...

area/documentation
area/testing
area/tool-framework

Few ideas to make conditionals more expressive: - allow for `when` tags match multiple options: - comma separated list `` or - even more powerful regexes `` (with `` it...

Datatypes can be either visible in uploads or not (`display_in_upload="true|false"`). There are good reasons to to keep this distinction: - some datatypes exist "only" to ensure that correct inputs are...

area/testing