M Bernt

Use mamba instead if --solver libmamba to create conda environemnts

3

For container building. In order to be consistent with what is done when building [conda environments (non-containerized)](https://github.com/galaxyproject/galaxy/blob/f11e4fa329adadb4c040137e1661a36bf3b64fab/lib/galaxy/tool_util/deps/conda_util.py#L176). Background: I just stumbled over this when I tried to debug a multi-package-container...

Document the use of zipped test data

11

and slightly extend test. ## How to test the changes? (Select all options that apply) - [ ] I've included appropriate [automated tests](https://docs.galaxyproject.org/en/latest/dev/writing_tests.html). - [x] This is a refactoring of...

Conda packaging and galaxy tool

2

I'm currently considering including PepNet in [Galaxy](https://galaxyproject.org/), i.e. to add a Galaxy tool. For this, a conda package for Pepnet would be required. I could work on both (actually I...

reverts #17656 we have to many xml nodes where this is allowed (e.g. command) and limiting the linter to a statically defined list of node types seemed difficult to maintain...

Just the binary from the OpenMS THIRDPARTY repo, since compilation did not work out so far https://github.com/bioconda/bioconda-recipes/pull/19219 Since this is "shipped" with OpenMS2.5 it is hopefully of use -- thirdparty...

Playlist can be found here: https://www.youtube.com/@QIIME2/playlists Link should be: https://www.youtube.com/watch?v=iqz1c2QhUD8&list=PLbVDKwGpb3XmvnTrU40zHRT7NZWWVNUpt&pp=iAQB .. but not sure if this is a stable link.

Create combined markdown report in weekly CI

2

I guess writing it to `GITHUB_STEP_SUMMARY` will still not work (because it's to large). But there is only one way to find out. FOR CONTRIBUTOR: * [ ] I have...

FOR CONTRIBUTOR: * [x] - I have read the [CONTRIBUTING.md](https://github.com/galaxyproject/tools-iuc/blob/master/CONTRIBUTING.md) document and this tool is appropriate for the tools-iuc repo. * [x] - License permits unrestricted use (educational + commercial)...

Check lint skip types only for tool linting

2

the `Linter.list_linters` function only lists tool linters.