M Bernt
Follow up on https://github.com/galaxyproject/galaxy/pull/12713 If a datatype does not define `file_ext` sniffing does not work, so maybe its a good idea to assert. Not sure if this will be noticed....
This is first attempt to lint for input parameters that are not used: - in `command` or `configfile` - in `output/filter` - in `/outputs//change_format/when` Basic idea is to grep for...
Like in the filter for selects with dynamic options. Note actually in the select case we check if the referred dataset has the dbkey set while we do this here...
- all attributes - and text fixes https://github.com/galaxyproject/galaxy/issues/12628 Not sure if this is (now) a good idea? ## How to test the changes? (Select all options that apply) - [x]...
This PR implements some changes that were originally in https://github.com/galaxyproject/galaxy/pull/12280 1. refactoring of iter_headers: instead of using `compression_utils.get_fileobj` of the given data is not a FilePrefix it might be better...
I misread https://github.com/galaxyproject/galaxy/issues/11291 .. actually missing the point that its about empty collections .. and tried to add a test case that submits a tool with a mandatory data parameter...
In the first place this PR added a test case (`test/functional/tools/bam_input_for_sam.xml`) showing that in tests (e.g. with `planemo test`) data parameters of tools accept input of arbitrary datatypes. The test...
## What did you do? So far only a test .. want to see what fails .. side project of https://github.com/galaxyproject/galaxy/pull/11754 by adding a `.` this can not be accessed...
## What did you do? Implements `format_source` for output collections as default format that may be overwritten by discovered extensions. TODO: - [ ] target branch / backport? Since this...
## What did you do? mulled containers are currently pulled only if `install=True`, but they should be pulled if `auto_install=True` ## Why did you make this change? https://gitter.im/galaxyproject/dev?at=6053720633346c16275e5079 ## How...