James Ferguson
James Ferguson
Hello, Could you give me some more info? - the command being used - if the fast5 files are multi-fast5 or single Thanks
Hello. I Should be able to output all the hits above some threshold. I'll plan to make it a flag to turn it on/off, off by default. I'm at a...
Thanks Martin (@noncodo) saved me a headache, I owe you a beer.
Hey, Sorry for the delay. Have you tried on a different fast5 file? SquiggleKit has been going through a bit of a messy update (which I plan on fixing soon)....
Hmm that looks like 2 things. H5py isn't able to open the file being provided, and then it looks like Tk isn't available for matplotlib (the various back ends for...
Hmm okay, Give this a try if you have sudo to install tkinter https://stackoverflow.com/a/42244548
So that error is looking like it can't get around using agg for plt.show() So let's get around that and save it instead and skip the live viewer. `python3.6 ./SquigglePlot.py...
Hello, I've been able to identify the issue here reading hdf5 files with that error from another issue. That user was kind enough to share some data with me so...
Hello, Here are a few suggestions to help. The `-p` command is for a top path, not an individual file. So if trying to use the example fast5 file, point...
It depends how you are demultiplexing, and what you mean by strains? More information is required for me to answer your question.