James Ferguson
James Ferguson
Hello Emma, When you say it "still hasn't fixed the issue", do you mean you are still getting the same `OSError`? Are you running everything in an environment? Please try...
Ahh, i see. Your mac has an ARM64 processor and you installed an x86_64 install Please remove the VBZ version you installed, and re-install an ARM compatible version. For example,...
Hello, I'm currently away until the 10th of Jan. You should be able to use squiggle plot on the fast5 files directly. Squiggle pull is going to be deprecated very...
If you run the command something like this ``` python3 ./SquigglePlot.py -i data.fast5 --no_show --save test.png --save_path ./test ``` This will plot every read in the data.fast5 multi fast5 file....
hmm, the latest python3 should be used...3.6.3. Seems the library is only half baked in earlier versions
I think the best way to handle this would be to ingest a fasta file for the barcodes. Then just have an argument to select the file (with default set...
I have narrowed this down to be an issue with various fast5 versions. and they way the files are written by ONT. Given slow5 and pod5 are the dominant file...
Ahh thanks for that. I was trying to do some comparisons between algorithms, without being aware of each other. So probably a low priority fix :) My shuffle script fixes...
Hey, Thanks for the reply. I think my meaning was lost in my language. "skipping to", as in, start the process at the Dirichlet distribution step. We are looking at...
Oh, and have fun at the conference. Let me know if there is any progress or way I can help.