James Ferguson

Please make it specifically not_set with an underscore to match that of the current pod5 output. Feel free to use the test scripts in blue-crab as boilerplate to test if...

Hey there, Please see in the other issues, such as https://github.com/Psy-Fer/deeplexicon/issues/27 That Eva has an alternative to offer. @enovoa could you please provide contact info for them to get in...

Hey, RNA004 signal won't work with deeplexicon. As it was trained with RNA001/2 on R9.4.1 flowcells. Conversion won't change the data inside. As far as deeplexicon goes, it is essentially...

Hey Martin, Good question. I asked nanopore if they needed a multiplexing option for RNA004 for release and they told me they had a solution....just like when they told me...

This looks related to the numpy version. Double check it's at the correct version (not 2.0)

It was designed to use GPU, but can use CPU, however it will be very slow. It is also very sensitive to package and cuda/driver versions, as this is all...

Ahh this is to do with h5py it seams https://github.com/Psy-Fer/deeplexicon/issues/13#issuecomment-876567110 try using `h5py==2.10` james

Deeplexicon was written in 2018/19 and a lot has changed since then in terms of file schemas, libraries, data. Could it be related to VBZ compression of the fast5 files?...