James Ferguson
James Ferguson
Hey, Sorry for the bugs. I've been meaning to do an overhaul. But yes, I moved scrappie into MotifSeq to make it a little easier. Otherwise, check the structure of...
Oh great. Yea, it already can look at RNA. You just have to change the flag for which scrapie model to use. However it won't give you bit probability, as...
Can you show me the command you used for that?
Hello, I'll have a look and get back to you soon. Sorry for the Inconvenience. James
Hello, I ran the following command on my Ubuntu 18.04 system ``` python3 SquigglePlot.py -i example/test.fast5 ``` inside the repo folder, and it works. Is your system set up to...
Hello, that is strange. Would you be willing to share 1 fast5 file with me to test it? I have not seen this bug before, so will need to do...
Hello, Could you do a `git pull` and then try again, but with the `--single` flag added? SquiggleKit was originally designed around single fast5 files, and when multi files came,...
Hmm, Try it with python2 if you can (it was originally built for that and should work). I'll see if I can troubleshoot why it's failing with python 3. James
Okay now that's interesting. What happens if you just run it with -h as the only argument? You should be getting errors on stderr if something is going wrong
Okay, could you try the -i and --single commands like before, but with --save test.png --save_path ./ --no_show This will check if the back end of matplotlib is working, without...