James Ferguson
James Ferguson
Okay, so after some more feedback from ONT it looks like I'm going to need to change how my worker threads handle data, to make them a little more aggressive...
I have written a new data model that is being tested in dev, and will be available in the new release. It solves this issue.
Hey, So previously this was an option to run in buttery-eel, however I removed it as it was a passthrough arg you could send to the server much like `--use_tcp`....
Hey, Okay, so let me go through these > It is a great suggestion about the model conversions. @Psy-Fer, we should maintain some server to standalone model mapping page in...
When you basecall, the actual model and model version are printed into the first line of each fastq record or in the header lines of the uSAM. Otherwise it's a...
Do you think if I provided uBAM (unaligned) instead of uSAM this would mitigate some of this? I can add that as a feature update.
It uses samtools fastq for either uSAM or uBAM to pipe into Minimap 2. Use the -T flag in samtools and -y in minimap2 to carry flags through the formats....
Nah, though it will add a dependency. I'll add it to the list of new features.
This makes me ask the obvious question as well. Is pore_type still not used by nanopore software? I was under the impression here that minknow had started using it. Is...
Hmmm okay. Thanks.