James Ferguson
James Ferguson
ooh, yea, that's the issues. I have not had a chance to test the pull request just yet, but if you have the skill to merge and run that pull...
Okay, i've reviewed the merge and tested it, and now accepted and merged it. If you do a `git pull` to get the most up to date code, you should...
Hello, Deeplexicon is in a bit of a sorry state. It was built while tensorflow and many of the other packages around it were going through rapid development and upgrades....
Minor update, this has spurred Martin and I to get a student to update Deeplexicon as a project. I'll still look at this issue though.
Thanks for picking that up. We are considering doing a new release for RNA004, in which case I'll re-write this whole thing to be more stable (and waaaaay faster). Just...
Hello, Could you please give me the full command you used, and with which version of the software, as well as any errors you are encountering. Thanks, James ps @lpryszcz...
Ahh, deeplexicon_sub.py doesn't have a -t for threads, but for a --test command. please use deeplexicon_multi.py with `--threads` argument
Yep,. I'm on break at the moment and will be back in the new year. We can probably remove the test flag too so we can free up the -t...
Hello Oscar, We did plan on doing this much earlier, however, we were not given early access to the kits/flowcells, and along with the announcement that nanopore were going to...
Hello, That looks like your fast5 files have VBZ compression on them. Please follow the instructions noted here on squigglekit to install the vbz plugin for the H5py library to...