SCP

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Error: RunDEtest

1

> pancreas_sub

WANGROUOYI

RunDEtest not running

2

Hi, I used RunDEtest before and it worked just fine. Now that I'm using the latest SCP version (SCP 0.5.4) because of the velocity genes error, this doesn't work anymore...

giorgiatosoni

Error in RunCellQC(srt = seu_obj)

3

May I ask how to solve this problem? Error in RunCellQC(srt = seu_obj) : The db_rate is equal to or greater than 1!

WANGROUOYI

RunSCVELO crash on Mac M1

1

Hi ! I tried the pancreas tutorial dataset and it's crash I tried on Python and it's worked How can I do ?

BenjaminDEMAILLE

install problem

1

When I run renv::install("zhanghao-njmu/SCP", repos = BiocManager::repositories()), it shows: > renv::install("zhanghao-njmu/SCP", repos = BiocManager::repositories()) 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org...

ywl506803062

Documentaion for the functions

1

Thanks for creating the package and making wrappers for a bunch of useful functions. I was trying to find more documentation for functions but have not had much success. For...

hamidghaedi

Timeout was reached when accessing Ensembl archives

1

Hi Hao, I am facing problems right now when I implementing SCP on biotrainee.vip. When I ran FeatureHeatmap using demo dataset, an error was reported as follows: ``` > ht

realzwu

would you add the scMerge2 in the integrated method part

1

xflicsu

AnnotateFeatures

2

sce

2959493126

QC

1

The question of whether a default UMI of 3000 is too high for QC？

Andymare1994