seurat topic

List seurat repositories

ARCoreInsideOutTrackingGearVr

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Inside Out Positional Tracking (6DoF) for GearVR/Cardboard/Daydream using ARCore v1.6.0

scCATCH

205
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Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

tidyseurat

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Seurat meets tidyverse. The best of both worlds.

cellxgene_VIP

122
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42
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Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...

Interactive-3D-Plotting-in-Seurat-3.0.0

109
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27
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This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

Seurat-to-RNA-Velocity

126
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26
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A guide to using a Seurat object in conjunction with RNA Velocity

SCpubr

132
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10
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Generate high quality, publication ready visualizations for single cell transcriptomics data.

SCP

350
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An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

ReductionWrappers

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R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)