SCP
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zhanghao-njmu
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Hi, I have a single cell dataset that was processed using Seurat. So my suerat object has an SCT assay well and the dimensions are different from the RNA assay....
Tried installing SCP with devtools. I have python 3.10
Hi, Thank you for creating this very promising resource! I would love to be able to use and test the package. I keep running into the error below when I...
Citation
Hi developer, We wish to cite this method for using some of its functions in our analysis. Is there a link for it? Thanks Best wishes, Max
This is really great pakage thank you @zhanghao-njmu . Howevere I am unable to run PrepareVirtualEnv commend. . ``` PrepareVirtualEnv(python = py, pipy_mirror = "https://pypi.tuna.tsinghua.edu.cn/simple", remove_old = TRUE) Error in...
Hello, SCP team, I have an unresolved question and would appreciate your guidance. Why does setting the angle parameter not work in the theme function? This question has puzzled me...
Hi, The following is running from past 12 hrs, but no success, is there any way to speed this up? thanks for your help in advance. > N
Hello! Thanks for the package and nice visualizations! I am trying to run RunDynamicFeatures and would like to ask what's the expected runtime. I think the function fits GAM similar...
Why is the number of DEGs output by FeatureHeatmap largely lower than that obtained from RunDEtest?
Hello, SCP team, I have two unresolved questions and would appreciate your guidance. Firstly, I noticed that the FeatureHeatmap generates a heatmap with a very small number of genes. As...
这是我见过单细胞转录组分析工具箱最好的一个，也是最漂亮的，足见作者的下的功夫和时间。 但是有一点点的建议，脚本写的过于冗长，有些参数我认为从开发的角度没有必要预设，先把工具发出去，确认好版权就可， 对于不同的功能让使用者基于框架自己diy即可，不然后期在升级和更新维护上，可能会浪费作者不少时间
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An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.