prokka
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:zap: :aquarius: Rapid prokaryotic genome annotation
------------- EXCEPTION ------------- MSG: Could not write file '/data/chloroscan/binny_output/intermediary/prokka.faa': No such file or directory STACK Bio::Root::IO::_initialize_io /home/student.unimelb.edu.au/yuhtong/mambaforge/envs/prokkaenv/lib/perl5/site_perl/Bio/Root/IO.pm:272 STACK Bio::SeqIO::_initialize /home/student.unimelb.edu.au/yuhtong/mambaforge/envs/prokkaenv/lib/perl5/site_perl/Bio/SeqIO.pm:508 STACK Bio::SeqIO::fasta::_initialize /home/student.unimelb.edu.au/yuhtong/mambaforge/envs/prokkaenv/lib/perl5/site_perl/Bio/SeqIO/fasta.pm:88 STACK Bio::SeqIO::new /home/student.unimelb.edu.au/yuhtong/mambaforge/envs/prokkaenv/lib/perl5/site_perl/Bio/SeqIO.pm:384 STACK Bio::SeqIO::new /home/student.unimelb.edu.au/yuhtong/mambaforge/envs/prokkaenv/lib/perl5/site_perl/Bio/SeqIO.pm:430 STACK...
Hello, I am currently reannotating many _P. aeruginosa_ genomes, and I want to use the PAO1 annotations from the pseudomonas genome database, with a couple of other proteins, as a...
Hi, I have a problem annotating genome of my rabies samples. Although I have a file with gene specific proteins in .faa format, at the time of annotation it marks...
Hi I'm reporting a bug. When running Prokka you may encounter errors such as the following ``` [11:07:19] Looking for 'blastp' - found /mgpfs/apps/bioinformatics/apps/prokka-env/1/bin/blastp [11:08:49] Determined blastp version is 2.16...
I'm trying to use this command line to annotate several genomes in FASTA format that exist in a directory, but the problem is that it only annotates one genome command...
Dear developer, I used prokka to annotate metagenomic assembled contigs to find the ribosomal proteins. I tried `--kingdom Bacteria` and `--kingdom Archaea` options, and I noticed the `.fna` files were...
Prodigal penalizes predicting genes that are shorter than 250 bp (83 aa). As a result, Prokka is missing a number of short proteins that do exist in a closely related...
Hello, I would like to know how we can annotate several genomes in FASTA format that exist in a file using Prokka on Linux. Thank you in advance
How to annotate **several genomes** in fasta forms that exist in a file by prokka on linux. Thank you in advance
