sciworkflows topic
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sciworkflows repositories
common-workflow-language
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Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwltool
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Common Workflow Language reference implementation
dna-seq-gatk-variant-calling
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This Snakemake pipeline implements the GATK best-practices workflow
rna-seq-star-deseq2
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RNA-seq workflow using STAR and DESeq2
dna-seq-varlociraptor
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A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
rna-seq-kallisto-sleuth
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A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
kGWASflow
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kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.