sciworkflows topic
common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwltool
Common Workflow Language reference implementation
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.