genomic-variant-calling topic
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genomic-variant-calling repositories
dna-seq-gatk-variant-calling
253
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This Snakemake pipeline implements the GATK best-practices workflow
dna-seq-varlociraptor
86
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42
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A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Var...
grenepipe
87
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21
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A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.