scatac-seq topic
BEER
BEER: Batch EffEct Remover for single-cell data
SCAVENGE
SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
CellScopes.jl
A Julia package for single cell and spatial data analysis
single_cell_toolkit
Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluster.
pychromVAR
A python package for chromVAR
ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
ArchR-h5ad
Parse ArchR arrow files to anndata h5ad