ngs topic

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

OpenGene

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

google

Official code repository for GATK versions 4 and up

broadinstitute

C library for high-throughput sequencing data formats

samtools

A Java API for high-throughput sequencing data (HTS) formats.

samtools

Detect and visualize target mutations by scanning FastQ files directly

OpenGene

Accurate and flexible loops calling tool for 3D genomic data.

YaqiangCao

UGENE is free open-source cross-platform bioinformatics software

ugeneunipro

Tools to process and analyze deep sequencing data.

deeptools

Java utilities for Bioinformatics

lindenb