OpenGene - Open Source Genomics Toolbox

Results 18 repositories owned by OpenGene - Open Source Genomics Toolbox

fastp

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An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

AfterQC

203
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50
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Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

MutScan

145
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38
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Detect and visualize target mutations by scanning FastQ files directly

awesome-bio-datasets

203
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42
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awesome-bio-datasets

gencore

109
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32
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Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

OpenGene.jl

64
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(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

fastv

109
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24
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An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

GeneFuse

114
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62
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Gene fusion detection and visualization

CfdnaPattern

58
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21
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Pattern Recognition for Cell-free DNA

ctdna-pipeline

36
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A simplified pipeline for ctDNA sequencing data analysis