OpenGene - Open Source Genomics Toolbox
OpenGene - Open Source Genomics Toolbox
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
MutScan
Detect and visualize target mutations by scanning FastQ files directly
gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
GeneFuse
Gene fusion detection and visualization
CfdnaPattern
Pattern Recognition for Cell-free DNA
ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis