tumor topic

Personal Cancer Genome Reporter (PCGR)

sigven

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dellytools

Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.

guillaumefrd

This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows...

gatk-workflows

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

digitalcytometry

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

getzlab

🦀 Tumor growth simulation in C++/R

heavywatal

a PyQt5 Implementation

sustdeeplearning

Sturgeon is a CNS neural network classifier

marcpaga

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

rmsandu