bwa topic
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bwa repositories
ngless
143
Stars
25
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NGLess: NGS with less work
genozip
149
Stars
11
Forks
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A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
FastQ-Screen
54
Stars
15
Forks
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Detecting contamination in NGS data and multi-species analysis
docker-4dn-hic
55
Stars
17
Forks
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Docker for 4DN Hi-C processing pipeline
alignment-nf
25
Stars
12
Forks
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Whole Exome/Whole Genome Sequencing alignment pipeline
genomics-pipelines
15
Stars
12
Forks
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secondary analysis pipelines parallelized with apache spark