fastq topic
genomics
A collection of scripts and notes related to genomics and bioinformatics
vsearch
Versatile open-source tool for microbiome analysis
ngless
NGLess: NGS with less work
nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
rasusa
Randomly subsample sequencing reads
fqtools
An efficient FASTQ manipulation suite
FastQt
FastQC port to Qt5: A quality control tool for high throughput sequence data.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases