Theis Lab
ncem
Learning cell communication from spatial graphs of cells
paga
Mapping out the coarse-grained connectivity structures of complex manifolds.
pseudodynamics
Dynamic models for single-cell RNA-seq time series.
single-cell-best-practices
https://www.sc-best-practices.org
scib-reproducibility
Additional code and analysis from the single-cell integration benchmarking project
trVAE
Conditional out-of-distribution prediction
cpa
The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs...
hadge
Comprehensive pipeline for donor demultiplexing in single cell