microscopy topic

Scientific analysis of nanoscale materials imaging data

pycroscopy

Axon/Myelin segmentation using Deep Learning

axondeepseg

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for...

BMIRDS

Tools for computational pathology

Dana-Farber-AIOS

Image-processing software for cryo-electron microscopy

3dem

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

AllenCellModeling

Automated 3D cell detection in very large images

brainglobe

PyTorch Connectomics: segmentation toolbox for EM connectomics

zudi-lin

cuCIM - RAPIDS GPU-accelerated image processing library

rapidsai

Read and write Neuroglancer datasets programmatically.

seung-lab