scIB Reproducibility

This repository contains supplementary code to reproduce the analyses presented in the single-cell integration benchmarking paper. For other parts of the scIB project see these repositories:

• scIB package
• scIB pipeline
• Data used in the study

Some supplementary results can be viewed on the results website at https://theislab.github.io/scib-reproducibility.

Directory structure

• data/ - Data files with benchmarking results used to create figures and the results website
• docs/- The rendered results website
• notebooks/ - Jupyter notebooks used for preparing evaluation datasets and metrics
• scripts/ - Additional analysis code
• visualization/ - Code for generating figures and visualizations
• website/ - Code for generating the results website