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GMOD
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Time for honesty: I didn't actually test this change! I feel a little like this is a "I'm feeling lucky" PR. helping people figure out how to use regex in...
If someone creates a trackLabel with unicode then the generate-names command is unable to index these tracks saying no tracks were found. This uses decode('UTF-8', filename) on several places in...
# Submitting a pull request Please base your pull request based on the "dev" branch of JBrowse The default branch is "master" but this contains the last stable release, and...
This is a small PR to create a bedgraph store usable with tabix Might need a little fleshing out for global/local statistics functions but could be useful for someone, this...
ESlint does not do any formatting of the source code currently. This adds a massive ESlint formatting of the codebase Pros: Fails PR for bad formatting, better general standards for...
This puts the JBrowse codebase on solid babel-7 footing, and does less weird stuff with specific exclusions for excluding node_modules in the babel-loader.
This PR attempts to allow the user to save configuration changes across refreshes by storing configs in localStorage. It hooks into jbrowse at a low level and can save edits...
- JBrowse version: 1.16.6 In previous versions of jbrowse (up to 1.16.5 as far as i can tell), running flatfile-to-json.pl with the --bed and --subfeatureClasses options would give you a...
From http://jbrowse.org/demos/yeast_pilon_jbrowse_datadir.tar.gz 
Have http://jbrowse.org/demos/yeast_pilon_jbrowse_datadir.tar.gz ``` bin/generate-names.pl --out ~/yeast_pilon_jbrowse_datadir ✘ 130 Can't use string ("") as an ARRAY ref while "strict refs" in use at /home/cdiesh/src/gmod/jbrowse/bin/../src/perl5/Bio/JBrowse/Cmd/IndexNames.pm line 78. at /home/cdiesh/src/gmod/jbrowse/bin/../src/perl5/Bio/JBrowse/ConfigurationManager.pm line 7. Bio::JBrowse::ConfigurationManager::__ANON__("Can't...