jbrowse

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add `thinColor` style for bigBed tracks

2

When I load bigBed tracks into JBrowse, I noticed that the `utrColor` style setting is not used. Instead, the entire feature is the same color, unlike the `ProcessedTranscript` glyph. This...

benwbooth

Users are allowed to open unindexed BED, GFF for example but unindexed VCF currently not available

cmdcolin

alignments2 - change track height in track menu

6

Is this on anyone's radar? I know it's a simple item to add directly

keiranmraine

onclick handler with newWindow action opens two windows in FireFox

15

I'm using JBrowse 1.11.4, with FireFox 31. I have a set of CanvasFeatures tracks with a custom onclick handler that looks like: ``` "onClick" : { "action" : "newWindow", "url"...

benwbooth

It would be nice to be able to display a single track in multiple categories in the hierarchical track selector. Currently to do this, the track has to basically be...

ghost

Signed OS X electron builds

8

I think that something like this can help avoid security warnings. On OSX, the helper is here https://github.com/electron-userland/electron-osx-sign/wiki/1.-Getting-Started This helps avoid the dark design pattern where only right-click->open on mac...

cmdcolin

Customize display of coverage depth as XYCoverage with log scale

5

I like the ability to add a "histograms" option for displaying bam tracks when zoomed out. However, I struggle to configure the display of said histograms in the same way...

thomasvangurp

rewrite/refactor bigwig and bigbed stores as node modules

1

This is a combo-issue to refactor BigWig and BigBed stores as node modules They include similar code and data structures actually so they're a bit intertwined, it is some question...

cmdcolin

Popup for a GFF3Tabix feature: callbacks not working in the "Attributes" section

5

Thanks for the fix of https://github.com/GMOD/jbrowse/issues/1122 in JBrowse-1.15.0 Unlike with NCList StoreClass, the callbacks ("fmtDetailValue" or "fmtDetailField") are not working in the "Attributes" section of the popup with GFF3Tabix storeClass...

loraine-gueguen

make sure OAuth2 implementation is polished and configurable

15

keiranmraine