jbrowse
jbrowse copied to clipboard
GMOD
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
`5 25037174 25038574` should be interpreted as `5:25037174-25038574` but is currently rejected
- JBrowse version = 1.15.4 - Web browser being used latest google chrome - Operating system if relevant - macOS mojave I believe there is a bug in how the...
# Desired Features ## configuration data model - a configuration is a base configuration, _plus_ a set of modifications to that base - valid configuration variables are defined with metadata:...
Leftover feature request by @nathanhaigh from #1235. Color by RG and estimate insert size separately by RG might be helpful for this
I don't have a lot of info on this but the supplementary alignment concept in BAM/CRAM uses a special "SA" tag with extra information about an alignment and also assigns...
Reads should be visually segregated (plus strand above, minus strand below) so that it is easier to see which gene models they support.
BigBed gene grouping is sort of difficult since there is no gene hierarchy indicating transcript children, so currently BigBed transcripts of the same gene arent loaded into a single gene...
Run export on all the currently visible tracks, each exporting to a different file. File -> Save visible region Pop up a dialog box that looks like the single-track export,...
- JBrowse version - [1.15.4] - Web browser being used - latest google chrome - Operating system if relevant - os mojave  As per the above image the track...