prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
I am getting an error while running PROKKA- ``` [13:12:05] There are still 2808 unannotated CDS left (started with 2808) [13:12:05] Will use blast to search against /net/fs-1/home01/shgu/miniconda3/envs/metawrap-env/db/kingdom/Bacteria/IS with 6...
Hi everybody, I am having an issue installing PROKKA, the error message is the following: Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)
Hi! Thanks a lot for making this useful tool!!! It usually works perfectly but I'm having problems annotating a few genomes I downloaded from the PATRIC database. This is my...
I use prokka a lot but having an issue with my HMM file. I am using a custom database and used hmpress prior running to index the HMM file. However,...
Dear Torsten, it seems that a conflict occurs since blastp/makeblastdb v 2.10 since the perl routine recognizes 2.10
Hello FYI I noticed that prokka biperl deection is no correct you expect `minbpver = "1.006002"` my bioperl versin claims to be `1.7.8` so `err("Please install BioPerl $minbpver or higher")...
Hi I am running prokka on singularity using commands below. I have also called BLAST 2.12 still running through the error in CDS annotation. Appreciate your help. --------------------------------------------------------------------------------------------------------------------------------------------------- # Command...
Hey! I have a problem with the GenBank files created by Prokka (v. 1.11) - the contig name and its length are not separated by a white space. I assume...
Hello, I am trying to annotate several Pseudomonas aeruginosa curated genomes with my customized database but I have found that something is not running well because of several genes are...
Hello I am trying to install prokka on my new mac MacOS BigSur M1. I tried just installing miniconda and installing with conda install -c conda-forge -c bioconda -c defaults...
