transcriptomics topic

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

saezlab

Python package to perform enrichment analysis from omics data.

saezlab

RNA sequencing analysis software

GuyTeichman

An R package to plot interactive three-way differential expression analysis

KatrionaGoldmann

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

NathanSkene

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

Novartis

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Novartis

Personalized Regression

blengerich

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

GoekeLab

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

stemangiola