transcriptomics topic

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

alexisvdb

Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

ZJUFanLab

An ontology of cell types

obophenotype

A tool to identify, orient, trim and rescue full length cDNA reads

nanoporetech

Reference-guided transcript discovery and quantification for long read RNA-Seq data

GoekeLab

Multi-sample Unified Discriminant ANalysis

JEFworks

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

COMBINE-lab

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

urmi-21

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.

VerisimilitudeX

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

markziemann